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The gut-brain-fat axis: How your microbes influence your metabolism

Your gut is more important than you might think. Studies have discovered a strong link between three parts of your body: the gut, the brain, and fat tissue. Together, these form what’s called the gut-brain-fat axis. Here’s how this connection helps your body decide how to use energy, whether to burn it or store it as fat.

May 29, 2025 / 14:26 IST
Factors like chronic stress, poor diet, and lack of sleep can negatively affect gut microbes, which in turn worsen metabolic health (Image: Canva)

Factors like chronic stress, poor diet, and lack of sleep can negatively affect gut microbes, which in turn worsen metabolic health (Image: Canva)


Trillions of tiny microbes live in your gut. They help manage hunger, inflammation, and how your body stores fat. Doctors now see them as a key part of understanding weight and health. This group of bacteria, known as the gut microbiota, is active and important.

Research shows that people with obesity often have different gut bacteria profiles compared to the lean ones. “The balance between two types of gut bacteria; Firmicutes and Bacteroidetes, can tell a lot about your health,” says Dr Muffazal Lakdawala, Director of Surgery at Reliance Foundation Hospital. “A higher proportion of Firmicutes tends to increase energy extraction from food, which may contribute to weight gain,” he adds.

These microbes ferment dietary fibres, producing short-chain fatty acids (SCFAs) such as butyrate and propionate that not only reduce inflammation but also improve insulin sensitivity and help regulate appetite by signalling the brain.

Also read | Boost gut health: 10 healthy habits to prevent bloating, constipation, irritable bowel syndrome

However, when the gut’s microbial balance is disrupted, a state called dysbiosis, harmful bacteria, may release substances like lipopolysaccharides (LPS) that cause inflammation in the body. This triggers insulin resistance, encourages fat storage, and disturbs the brain’s hunger cues.

  • It's a two-way street: Dr Lakdawala adds, "Factors like chronic stress, poor diet, and lack of sleep can negatively affect gut microbes, which in turn worsen metabolic health.” However, interventions such as prebiotics, probiotics, and fermented foods can restore a healthier microbial environment and improve key metabolic markers like triglycerides and uric acid.

  • Your gut microbes directly impact energy balance: The microbes in your gut influence how many calories you absorb from food. A microbial community skewed towards Firmicutes may extract more energy, increasing fat storage risk.

  • Short-chain fatty acids are metabolic superheroes: SCFAs produced by gut bacteria reduce inflammation, improve insulin sensitivity, and send signals to the brain to help control appetite and energy use.

Also read | 10 signs of unhealthy gut: Indigestion, skin irritation, fatigue, chronic inflammation, more
  • Dysbiosis fuels inflammation and metabolic disruption: An imbalance in gut bacteria can cause systemic inflammation, insulin resistance, and faulty hunger signals, all contributing to weight gain and metabolic diseases.

  • Lifestyle factors affect your gut health: Chronic stress, processed foods, and poor sleep harm your gut microbiota, exacerbating metabolic problems.

  • Nurture your gut microbes with diet: Prebiotics (fibres feeding good bacteria), probiotics (live beneficial bacteria), and fermented foods can restore balance and support healthier metabolism.

  • Gut health and weight-loss strategies: “Addressing gut health alongside diet and exercise leads to better metabolic improvements. It’s about supporting the microbial ecosystem, not just counting calories,” says Dr Lakdawala.
Disclaimer: This article, including health and fitness advice, only provides generic information. Don’t treat it as a substitute for qualified medical opinion. Always consult a specialist for specific health diagnosis.
Namita S Kalla is a senior journalist who writes about different aspects of modern life that include lifestyle, health, fashion, beauty, and entertainment.
first published: May 29, 2025 02:26 pm

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